Nghiem, Y., Cabrera, M., Cupples, C. G., and Miller, J. H. The mutY gene:  A mutator locus in Escherichia coli that generates GC-TA transversions.  Proc. Nat. Acad.Sci. U.S.A. (1988) 85, 2709-2713.

Michaels, M. L., Cruz, C., Grollman, A. P. and Miller, J. H. Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA.  Proc. Nat. Acad. Sci. U.S.A.  (1992) 89, 7022-7025.

Slupska, M. M., Baikalov, C., Lloyd, R., and Miller, J. H.  Mutator tRNAs are encoded by the Escherichia coli mutator genes mutA and mutC:  A novel pathway for mutagenesis.  Proc. Acad. Nat. Sci. USA.(1996) 93, 4380-4385.

Miller, J. H.  The relevance of bacterial mutators to understanding human cancer.  In Cancer Profiles (J. Tooze, editor).  Cold Spring Harbor Laboratory Press (1996) 28, 41-153.

Mao, E.F., Lane, L., Lee, J., and Miller, J.H.  The proliferation of mutators in a cell population.  J. Bacteriol. (1997) 35, 417-422.

Miller, J.H., Yeung, A., Funchain, P., Mao, E., Stewart, J., Luther, W., and Slupska, M.M. Temporary and permanent mutators lacking the mismatch repair system: the enhancement of mutators in cell populations.  Cold Spring Harbor Symp. Quant. Biol. (2000) 65, 241-252.

Fitz-Gibbon, S., Ladner, H., Kim, U.J., Stetter, K.O., Simon, M.I., and Miller, J.H. Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum.  Proc. Natl. Acad. Sci. U.S.A. (2002) 99, 984-989.

Garibyan, L., Huang, T., Kim, M., Wolff, E., Nguyen, A., Nguyen, T., Diep, A., Hu, K., Iverson, A., Yang, H., and Miller, J.H. Use of the rpoB Gene to Determine the Specificity of Base Substitution Mutations on the Escherichia coli Chromosome.  DNA Repair (2003) 2, 593-608.

Xie, Y., Yang, H., Cunanan, C., Okamoto, K., Shibata, D., Pan, J., Barnes, D. E., Lindahl, T., McIlhatton, M., Fishel, R., and Miller, J. H. Deficiencies in mouse Myh and Ogg1 result in tumor predisposition and G to T mutations in codon 12 of the K-ras oncogene in lung tumors. Cancer Res. (2004) 64, 3096-3102.

Kim, M., Wolff, E., Huang, T., Garibyan, L., Earl, A. M., Battista, J. R., and Miller, J. H. Developing a genetic system in Deinococcus radiodurans for analyzing mutations. Genetics (2004) 166, 661-668.

Yang, H., Wolff, E., Kim, M., Diep, A., and Miller, J. H. Identification of mutator genes and mutation pathways in Escherichia coli using a multicopy cloning approach. Molec. Microbiol. (2004) 53, 283-295.

Gabrovsky, V., Yamamoto, L., and Miller, J. H.  2005.  Mutator effects in Escherichia coli caused by the expresison of specific foreign genes.  J. Bacteriol. 187:5044-5048.

Miller, J. H. Perspective on mutagenesis and repair:  The standard model and alternate modes of    mutagenesis.  Critical Rev. Biochem. and Molec. Biol.  (2005)40, 155-179.

Zeibell, K., Aguila, S., Shi, V. Y., Chan, A., Yang, H., and Miller, J. H.  Mutagenesis and repair in Bacillus anthracis: The effect of mutators. J. Bacterio. In press.

Books

Miller, J.H. (1972). Experiments in Molecular Genetics.  Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 466 pp.

Miller, J.H. (1992).  A Short Course in Bacterial Genetics:  A Laboratory Manual for Escherichia coli and Related Bacteria. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 456 pp.

Miller, J.H. (1992).  A Short Course in Bacterial Genetics:  A Handbook for Escherichia coli and Related Baceria.  Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 437 pp.

Miller J.H. (1996).  Discovering Molecular Genetics:  A Case Study Course with Problems and Scenarios. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 700 pp.

Griffiths, A. J. F., Wessler, S. R., Lewontin, R. C., and Gelbart, W. M., Suzuki, D. T., and Miller, J. H. (2004). An Introduction to Genetic Analysis, 8th edition.  W.H. Freeman, New York, 782 pp.

Books Edited

Brenner, S. and Miller, J. H. (2001).  Encyclopedia of Genetics.  Vol. 1-4.  Academic Press, London, 2800pp.